CellBarcode - Cellular DNA Barcode Analysis toolkit
The package CellBarcode performs Cellular DNA Barcode analysis. It can handle all kinds of DNA barcodes, as long as the barcode is within a single sequencing read and has a pattern that can be matched by a regular expression. \code{CellBarcode} can handle barcodes with flexible lengths, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing, and metagenome data.
Last updated 8 days ago
preprocessingqualitycontrolsequencingcrisprampliconamplicon-sequencingcellular-barcoderustcargo
5.86 score 1 stars 40 scripts 188 downloadsggfigdone - Manage & Modify 'ggplot' Figures using 'ggfigdone'
When you prepare a presentation or a report, you often need to manage a large number of 'ggplot' figures. You need to change the figure size, modify the title, label, themes, etc. It is inconvenient to go back to the original code to make these changes. This package provides a simple way to manage 'ggplot' figures. You can easily add the figure to the database and update them later using CLI (command line interface) or GUI (graphical user interface).
Last updated 3 months ago
ggplot2
5.20 score 29 stars 4 scripts 234 downloadsscMitoMut - Single-cell Mitochondrial Mutation Analysis Tool
This package is designed for calling lineage-informative mitochondrial mutations using single-cell sequencing data, such as scRNASeq and scATACSeq (preferably the latter due to RNA editing issues). It includes functions for mutation calling and visualization. Mutation calling is done using beta-binomial distribution.
Last updated 3 months ago
preprocessingsequencingsinglecellopenblascpp
4.90 score 2 stars 5 scripts 130 downloads